Bioinformatics Resources Developed in Korea

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Contents

Resources Published in Bioinformatics

2007

Name

PMID

Description

Authors

Institution

SNP2NMD

17121775

Database of human SNPs causing nonsense-mediated mRNA decay

Areum Han, Woo-Yeon Kim, Seong-Min Park

KRIBB


2006

 Name

PMID

Description

Authors

Institution

AutoGo 

16428805 

Automatic Extension of Gene Ontology with Flexible Identification of Candidate Terms 

Jin-Bok Lee, Jung-jae Kim, Jong C. Park

GIST 

WebCell

16543278 

Web-based environment for kinetic modeling and dynamic simulation of cellular networks 

Dong-Yup Lee, Choamun Yun, Ayoun Cho, Bo Kyeng Hou, Sunwon Park, Sang Yup Lee

KAIST 

HCNet

16787974

Database of heart and calcium functional network

Seong-Eui Hong, Seong-Hwan Rho, Young Il Yeom, Do Han Kim

GIST

ADGO

16837524

Analysis of differentially expressed gene sets using composite GO annotation

Dougu Nam, Sang-Bae Kim, Seon-Kyu Kim, Sungjin Yang, Seon-Young Kim, In-Sun Chu

KOBIC

GS-LAGE

17032674

Large-scale analysis of GEO microarray data

Sukjoon Yoon, Young Yang, Jiwon Choi, Jeeweon Seong

Sookmyung Women's University



 

 




















2005


Name

PMID

Description

Authors

Institution

TFExplorer

15466909

Integrated analysis database for predicted transcription regulatory elements

Jinsoo Kim, Jungmin Seo, Young Seek Lee, Sangsoo Kim

NGIC/KRIBB

GOChase

15513987

Utilities to detect and correct the errors in GO-based annotations

Yu Rang Park, Chan Hee Park, Ju Han Kim

Seoul National University

HESAS

15591358

Human endogenous retroviruses Expression and Structure Analysis System

Tae-Hyung Kim, Yeo-Jin Jeon, Woo-Yeon Kim, Heui-Soo Kim

Pusan National University

PSIbase

15749693

Database of Protein Structural Interactome map (PSIMAP)

Sungsam Gong, Giseok Yoon, Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak

KAIST, NGIC/KRIBB

ArrayCyGHt

15746288

Analysis and visualization of array-CGH data

Su Young Kim, Suk Woo Nam, Sug Hyung Lee, Won Sang Park, Nam Jin Yoo, Jung Young Lee, Yeun-Jun Chung

Catholic University of Korea

POSBIOTM–NER

15814561

Trainable biomedical named-entity recognition system

Yu Song, Eunju Kim, Gary Geunbae Lee, Byoung-kee Yi

POSTECH

 jPHYDIT

 15855247

 JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences

 Yoon-Seong Jeon, Hwanwon Chung, Sunyoung Park, Inae Hur, Jae-Hak Lee, Jongsik Chun 

 Seoul National University

MFAML

15905275

A standard data structure for representing and exchanging metabolic flux models

Hongseok Yun, Dong-Yup Lee, Joonwoo Jeong, Seunghyun Lee, Sang Yup Lee

KAIST

TO-GO

15994194

Java-based Gene Ontology navigation environment

Ungsik Yu, Yoon Jeong Choi, Jung Kyoon Choi, Sangsoo Kim

NGIC/KRIBB


Resources Published in NAR Database/Web Server Issues


2007


 Name

PMID

Description

Authors

Institution

 Patome

 17085479

 Database server for biological sequence annotation and analysis in patents

 Byungwook Lee, Taehyung Kim, Seon-Kyu Kim, Kwang H. Lee, Doheon Lee

 KAIST

 ECgene

 17132829

 Alternative splicing database

 Yeunsook Lee, Younghee Lee, Bumjin Kim, Youngah Shin, Seungyoon Nam, Pora Kim, Namshin Kim, Won-Hyong Chung, Jaesang Kim, Sanghyuk Lee

 Ewha Womans University

 PAIDB

 17090594

 Resource for pathogenicity islands

 Sung Ho Yoon, Young-Kyu Park, Soohyoi, Tae Kwang Oh, Cheol-Goo Hur, Jihyun F. Kim

 KRIBB

 SNP@Ethnos

 17135185

 Database of ethnically variant SNPs

 Jungsun Park, Sohyun Hwang, Yong Seok Lee, Sang-Cheol Kim, Doheon Lee

 KOBIC/KRIBB


2006


2005